Density Functional Theory Investigation on Five-coordinated Iron Porphyrin Compounds
DOI: 10.23977/analc.2023.020104 | Downloads: 22 | Views: 781
Author(s)
Yikun Zhou 1,2, Xianqiang Chen 1,3, Jie Zheng 1, Jing Huang 1,3
Affiliation(s)
1 Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, College of Environmental and Biological Engineering, Putian University, Putian, Fujian, 351100, China
2 College of Chemical Engineering, Huaqiao University, Xiamen, Fujian, 361021, China
3 Key Laboratory of Ecological Environment and Information Atlas, Fujian Provincial University, Putian, Fujian, 351100, China
Corresponding Author
Jing HuangABSTRACT
This manuscript focuses on the quantum chemistry of five-coordinated iron porphyrin compounds [Fe (TiPrP) X] (X=F,Cl,I). Iron porphyrins are the core structures of heme enzymes, such as cytochrome P450 monooxygenase, peroxidase or catalase, whose active centers are iron porphyrin structures. The synthetic metalloporphyrin model has been widely applied to the study of mechanisms and intermediates of heme enzyme-related biological reactions, and metalloporphyrin catalysis provides new synthetic methods for important chemicals. In this paper, the geometric configuration of selected molecules was optimized using Gaussian 09 software. The geometric configuration optimization process was calculated using the heterogeneous density generalized theory B3LYP. To better investigate the electronic structure and orbital distribution of [Fe(TiPrP) X] (X=F,Cl,I), based on the molecular structure of the previous step, the Sddall basis group and Sddall pseudopotential were used for the Fe atoms and the all-electron 6-311G++(d,p) basis group was used for the rest of the atoms.
KEYWORDS
Penta-coordinated iron porphyrins, Fluorinated porphyrins, Electronic structureCITE THIS PAPER
Yikun Zhou, Xianqiang Chen, Jie Zheng, Jing Huang, Density Functional Theory Investigation on Five-coordinated Iron Porphyrin Compounds. Analytical Chemistry: A Journal (2023) Vol. 2: 25-32. DOI: http://dx.doi.org/10.23977/analc.2023.020104.
REFERENCES
[1] Bhupathiraju, N. V. S. D. K., Rizvi, W., Batteas, J. D., and Drain, C. M. (2016). Fluorinated porphyrinoids as efficient platforms for new photonic materials, sensors, and therapeutics. Organic and biomolecular chemistry, 14 (2), 389–408.
[2] Ko, Y. J., Yun, K. J., Kang, M. S., Park, J., Lee, K. T., Park, S. B., and Shin, J. H. (2007). Synthesis and in vitro photodynamic activities of water-soluble fluorinated tetrapyridylporphyrins as tumor photosensitizers. Bioorganic and medicinal chemistry letters, 17 (10), 2789–2794.
[3] Milot, R. L., and Schmuttenmaer, C. A. (2015). Electron injection dynamics in high-potential porphyrin photoanodes. Accounts of chemical research, 48 (5), 1423–1431.
[4] Nakazono, T., Parent, A. R., and Sakai, K. (2015). Improving singlet oxygen resistance during photochemical water oxidation by cobalt porphyrin catalysts. Chemistry, 21 (18), 6723–6726.
[5] Aggarwal, A., Bhupathiraju, N. V. S. D. K., Farley, C., and Singh, S. (2021). Applications of Fluorous Porphyrinoids: An Update. Photochemistry and photobiology, 97 (6), 1241–1265.
[6] Liu, W., and Groves, J. T. (2015). Manganese Catalyzed C-H Halogenation. Accounts of chemical research, 48 (6), 1727–1735.
[7] Balding, P. R., Porro, C. S., McLean, K. J., Sutcliffe, M. J., Maréchal, J. D., Munro, A. W., and de Visser, S. P. (2008). How do azoles inhibit cytochrome P450 enzymes? A density functional study. The journal of physical chemistry. A, 112 (50), 12911–12918.
[8] Cocco, G., Cocco, A., Sollai, F., Sanjust, E., and Zucca, P. (2017). Bioinspired versus Enzymatic Oxidation of Some Homologous Thionine Dyes in the Presence of Immobilized Metalloporphyrin Catalysts and Ligninolytic Enzymes. International journal of molecular sciences, 18 (12), 2553.
[9] Kubota, R., Asayama, S., and Kawakami, H. (2014). A bioinspired polymer-bound Mn-porphyrin as an artificial active center of catalase. Chemical communications (Cambridge, England), 50 (100), 15909–15912.
[10] Mahammed A. and Gross Z. (2011). The importance of developing metal complexes with pronounced catalase-like activity. Catalysis Science and Technology, 1, 535–540.
[11] Rajakumara, E., Saniya, D., Bajaj, P., Rajeshwari, R., Giri, J., and Davari, M. D. (2022). Hijacking Chemical Reactions of P450 Enzymes for Altered Chemical Reactions and Asymmetric Synthesis. International journal of molecular sciences, 24 (1), 214.
[12] Short, M. A., Sommer, R. D., Falzone, A. J., Huang, T., Weare, W. W., and Roizen, J. L. (2019). A five-coordinate iron (III) porphyrin complex including a neutral axial pyridine N-oxide ligand. Acta crystallographica. Section C, Structural chemistry, 75 (Pt 6), 717–722.
[13] Haedicke, I. E., Li, T., Zhu, Y. L. K., Martinez, F., Hamilton, A. M., Murrell, D. H., Nofiele, J. T., Cheng, H. M., Scholl, T. J., Foster, P. J., and Zhang, X. A. (2016). An enzyme-activatable and cell-permeable MnIII-porphyrin as a highly efficient T1 MRI contrast agent for cell labeling. Chemical science, 7(7), 4308–4317.
[14] Liu, Q. and Zhou, Z. (2009). Synthesis of iron porphyrins and their axial coordination properties. Journal of Hunan University of Science and Technology, 24 (03), 108-112.
[15] Zhang, X.Y., Cui, X., Wang, Y., Li, X., Zhang, G.Y. and Zhang, C. (2021). Synthesis of ferrocene porphyrin compounds and their substituent effects. Journal of Jilin University, 59 (02), 408-414.
[16] Huang, J. Yang, L. and Fu M. (2022). Theoretical investigations on the excited-state intramolecular proton transfer in the solvated 2-hydroxy-1-naphthaldehyde carbohydrazone. Open Chemistry, 20, 785-792.
[17] Huang, J., Li, F. and Qi Y. (2020). Comparative study on the impact of ethane/ethylene/acetylene addition on ignition of fuel-rich n-decane/air flame. UPB Scientific Bulletin, Series B, 82 (4), 185-198.
[18] Huang, J., Yang, L., Fu M., Chen Z., Liu W., Lin Y. and Yan Y. (2022). The effect of adding water electrolysis products on stability of the fuel-lean combustion in n-decane/air flames: a numerical study. UPB Scientific Bulletin, Series B, 84 (3), 109-120.
[19] Huang J., Ying, F., Su P. and Wu W. (2014). VBEFP/PCM: a QM/MM/PCM approach for valence-bond method and its application for the vertical excitations of formaldehyde and acetone in aqueous solution. Science China Chemistry, 57, 1409-1417.
[20] Ning, T., Song, J., Wew, J., Zhang. M., Lu, Q., Huang, J. and Li, C. (2018). Control of the electronic structure of manganese nitrido complexes by para ring substituents: a theoretical study. Chinese Journal of Structural Chemistry, 37, 1541-1549.
[21] Huang, J., Li, C., Wang, B., Sharon, D.A., Wu W. and Shaik, S. (2016). Selective chlorination of substrates by the halogenase SyrB2 is controlled by the protein according to a combined quantum mechanics/molecular mechanics and molecular dynamics study. ACS Catalysis 6, 2694−2704.
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